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Enzyme-Free vs. Enzyme-Based Cell Harvesting: Comparison

By David Bell  •   14 minute read

Enzyme-Free vs. Enzyme-Based Cell Harvesting: Comparison

Which is better for cultivated meat?
Cell harvesting is critical for turning 2D cell cultures into 3D structures that mimic meat. Two main methods exist: enzyme-based and enzyme-free. Here's a quick breakdown:

  • Enzyme-Based Methods: Faster, consistent, and scalable. Use enzymes like trypsin to detach cells but can be costly and may damage cell structures.
  • Enzyme-Free Methods: Use physical or chemical techniques, preserving cell integrity and reducing costs, but slower and less scalable.

Quick Comparison Table:

Factor Enzyme-Based Methods Enzyme-Free Methods
Cell Viability High (95%+); may impact matrix proteins Variable; preserves cell structure
Speed Fast (days) Slower (~10 days for first harvest)
Yield High Lower but retains cell quality
Cost Higher (enzyme costs) Lower (no enzymes needed)
Scalability Proven, automation-friendly Emerging, less consistent
Regulatory Ease Established protocols May need additional evaluations

Which to choose?

  • Use enzyme-based for speed and large-scale production.
  • Use enzyme-free for cost savings and premium product quality.

Both methods have pros and cons, and the decision depends on your production goals, budget, and regulatory needs.

Enzyme-Based Cell Harvesting: How It Works

Enzyme-based cell harvesting uses biological catalysts to break down the proteins that anchor cells to their growth surfaces. This approach has become a key method in cultivated meat production due to its consistency, affordability, and suitability for automation [7].

The Enzyme-Based Process Explained

The process begins with selecting the appropriate enzyme. Trypsin is the most commonly used enzyme for cell harvesting [5], but others are available depending on specific requirements.

The workflow starts with removing the growth medium and washing the cells with a buffer solution. The selected enzyme is then added at a precise concentration, and the cells are incubated at 37°C. During this incubation period, which varies depending on the enzyme and cell type, the enzymes break down the adhesion proteins that attach cells to their substrate.

For cultivated meat production, different enzymes are chosen for specific purposes. Recombinant trypsin, for instance, offers an animal-origin-free alternative to traditional trypsin [6]. Other options, such as TryPLE Express, dispase, and Accutase, are used when trypsin isn't suitable for certain cell types or applications [6].

The choice of enzyme can significantly impact the yield. For example, studies on bovine adipose tissue-derived mesenchymal stromal cells have shown that LiberaseTM (at a 0.1% concentration for 3 hours) produced the highest cell yield with a low population doubling time, outperforming Collagenase IA under the same conditions [7].

Some microcarrier systems are specifically designed to pair with certain enzymes. For example, CultiSpher S can be fully digested with trypsin, while Cytodex 3 requires dextranase for complete breakdown [6]. This compatibility between carriers and enzymes allows producers to streamline both cell growth and harvesting within the same system.

These details highlight the critical role enzymes play in facilitating cell harvesting for cultivated meat applications.

Uses in Cultivated Meat Production

Enzyme-based methods offer several benefits for production efficiency, particularly when working with mesenchymal stromal cells (MSCs) derived from adipose tissue. These cells are often used due to their abundance and high MSC content [7]. Collagenase type I is the enzyme most commonly used to isolate MSCs from adipose tissue [7], reflecting the need for specialised enzymatic approaches tailored to different tissue types.

One of the key advantages of enzyme-based methods is the time saved in commercial production. Compared to explant cultures, enzymatic digestion significantly reduces the time required for the first cell harvest [7], which directly improves efficiency and lowers costs.

The potential for automation further enhances the appeal of enzyme-based harvesting, especially for large-scale operations. These processes can be standardised and monitored using automated systems, ensuring scalability and consistent quality. However, producers must carefully balance efficiency with cell quality, as the purity and combination of enzymes used can influence cell isolation outcomes [7].

Enzyme-Free Cell Harvesting: Methods and Developments

Enzyme-free cell harvesting provides an alternative to traditional enzymatic methods, tackling some of the challenges associated with using biological catalysts. By relying on physical or chemical techniques, these methods allow cells to detach from growth surfaces without compromising their integrity.

Common Enzyme-Free Techniques

One of the most well-known methods in cultivated meat production is explant cell isolation. This technique involves placing small tissue samples directly onto culture surfaces, allowing cells to migrate naturally. This preserves critical cell–cell and cell–matrix interactions, which helps maintain quality and ensures cost efficiency - key advantages when isolating muscle stem cells from muscle tissue [1].

Another effective approach is bead-to-bead transfer, particularly useful in microcarrier systems. This method simplifies the process by eliminating steps associated with enzymatic detachment, reducing the risk of cell loss and quality degradation [4]. It works by facilitating direct contact between microcarriers, enabling cells to migrate to new surfaces. To enhance colonisation, an intermittent stirring regime is often employed: longer resting periods (OFF) are followed by brief stirring intervals (ON), ensuring nutrient distribution and encouraging cell attachment [4].

These techniques have laid the groundwork for further advancements in enzyme-free cell harvesting.

New Developments in Enzyme-Free Methods

Recent innovations are addressing the challenges of scalability and cost in large-scale production. For instance, researchers have made strides in optimising microcarrier-based systems. A study on bovine satellite cells demonstrated the scalability of enzyme-free methods, with cells grown at microcarrier concentrations of up to 80 cm²/ml and seeding densities ranging from 1,000 to 4,750 cells/cm². The optimal confluence was found to be between 15,000 and 25,000 cells/cm², achieving a tenfold microcarrier expansion ratio in a 3-litre bioreactor [4].

Cell line engineering has emerged as a cutting-edge approach in this field. By using techniques like CRISPR, companies such as Upside Foods, Inc. have developed methods to enhance cell growth rates. For example, knocking out or inhibiting CDK inhibitor genes reduces the time cells remain attached, significantly improving harvesting efficiency [9].

Another promising advancement is small molecule modulation, where researchers are exploring the use of small molecules to regulate the cell cycle. This allows for controlled increases in cell proliferation, which, when combined with enzyme-free techniques, can improve production efficiency [9].

Economic benefits from these developments are substantial. Studies suggest that cell culture media accounts for 30–90% of cultivated meat production costs [8]. By improving enzyme-free harvesting methods, producers can reduce media usage and lower overall costs. These innovations also address critical challenges like maintaining genomic stability and differentiation potential, with lessons drawn from cancer research and T-cell expansion helping to refine controlled cell proliferation techniques [9].

Direct Comparison: Enzyme-Free vs Enzyme-Based Methods

This section takes a closer look at how enzyme-based and enzyme-free techniques stack up against each other in key production areas. By comparing these methods, we can better understand the trade-offs in efficiency, cost, and compliance.

Method Comparison Table

Factor Enzyme-Based Methods Enzyme-Free Methods
Cell Viability Achieves over 95% viability; collagenase/trypsin combination yields the highest cell counts [7] Viability varies depending on the technique and cell type
Harvesting Speed Fast cell release; first harvest can occur within days Slower initial harvest; explant cultures typically take ~10 days for the first passage [7]
Cell Yield Higher overall yield; collagenase/trypsin is the most effective Lower initial yield but preserves cell integrity
Cost Impact Higher enzyme costs but faster processing Lower reagent costs; no need for specialised enzymes
Reproducibility Consistently reproducible results; suitable for automation [7] Outcomes vary more; operator skill plays a larger role
Cell Phenotype Impact Extended exposure may degrade extracellular matrix proteins [7] Maintains natural cell–cell and cell–matrix interactions
Regulatory Considerations Established protocols ease regulatory approval Novel methods may require additional safety evaluations
Scalability Proven scalability; automation-friendly Scalability still emerging

This table highlights the key differences, helping to assess which method fits best for commercial-scale operations.

Which Method Works Better for Large-Scale Production

When it comes to large-scale production, enzyme-based methods stand out for their scalability and automation. Their ability to deliver consistent, fast results makes them ideal for commercial operations that prioritise throughput and reliability.

However, enzyme-free methods are gaining attention for their potential to cut costs. Since the culture medium accounts for 55–95% of the final cost of cultivated meat [10], eliminating expensive enzymatic reagents can significantly reduce production expenses. Additionally, enzyme-free techniques simplify processing steps, which can further lower costs.

French company Gourmey showcased this potential in 2023. Using a 5,000-litre bioreactor system, they achieved production costs of about £2.80 per pound (roughly £6 per kilogram) [11].

"Our focus has always been on building something technically sound, economically viable, and globally scalable to maximise our impact" – Nicolas Morin-Forest, co-founder and CEO of Gourmey [11]

In the UK, the regulatory landscape is also evolving to encourage innovation. The Food Standards Agency (FSA) has allocated £1.6 million to the Engineering Biology Sandbox Fund [12]. While novel food applications take an average of 2.5 years to gain approval, established enzymatic methods offer a quicker path to market.

Ultimately, the choice between these methods depends on a company’s priorities. Enzyme-based approaches are perfect for those seeking speed and proven scalability, while enzyme-free methods appeal to businesses focused on cost efficiency and preserving the natural characteristics of cells - particularly for premium products.

As the UK strengthens its position in Europe’s cellular agriculture market [13], initiatives like the regulatory sandbox programme create opportunities to test enzyme-free innovations while ensuring safety under the Novel Foods Regulation.

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Pros, Cons, and Best Use Cases

Choosing between enzyme-based and enzyme-free harvesting methods often comes down to understanding their respective strengths and weaknesses. Each approach has its own set of benefits and challenges, making them suitable for different production needs.

Enzyme-Based Methods: Pros and Cons

Enzyme-based harvesting is known for its speed and reliability. This method works seamlessly with automated systems, allowing initial cell harvests to be completed within just a few days. It's a great fit for high-throughput production where efficiency is a priority.

On the downside, this method comes with high reagent costs and the risk of cell stress. Enzymatic dissociation can potentially damage key extracellular matrix components, which may affect the overall quality of the cells being harvested [1].

Enzyme-Free Methods: Pros and Cons

Enzyme-free harvesting offers a cost-effective alternative by eliminating the need for expensive reagents. This approach also helps maintain natural cell–cell and cell–matrix interactions, which is critical for producing high-quality cells. For example, studies have shown that explant isolation can yield excellent results in terms of cell quality [1]. However, this method requires more time, with the first cell passage typically taking about 10 days.

These contrasting strengths and limitations make it clear that the choice of method depends heavily on the specific goals of the production process.

When to Use Each Method

The decision of which method to use often hinges on the priorities of the project.

  • Enzyme-based methods are ideal for large-scale production environments where speed and consistency are paramount. Their ability to deliver rapid processing makes them a go-to option for operations requiring high throughput or quick turnaround times.
  • On the other hand, enzyme-free methods shine in situations where preserving the natural structure and interactions of cells is crucial. They are particularly well-suited for specialised product development or early-stage research, where maintaining cell integrity is a top priority.

Each method has its place, and understanding these nuances can help producers make informed decisions tailored to their specific needs.

Cell Harvesting in the Cultivated Meat Industry

Cell harvesting is where cutting-edge science meets the dinner table. The way cells are collected and processed plays a major role in shaping production costs, as well as the taste and texture of cultivated meat. Let's dive into how this essential step impacts both the technical and consumer aspects of the industry.

How Cell Harvesting Affects Final Product Quality

The method used to harvest cells - whether enzyme-free or enzyme-based - directly influences the quality of cultivated meat. These techniques affect the structural integrity of the cells, as well as how they interact, differentiate, and metabolise. These factors are crucial for maintaining the muscle tissue's texture and overall quality [15].

Recent advancements in cell harvesting technology are delivering impressive results. For example, CARR Biosystems has partnered with cell agriculture experts to refine their Unifuge platform. This system has been tested for chicken, salmon, and bovine cells, achieving a remarkable 90% to 95% cell recovery rate. Even better, the process is gentle on the cells, with less than 5% viability loss and under 1% LDH release, indicating minimal cell damage [16].

Another breakthrough comes from a new bioreactor system capable of growing an astonishing 130 billion cells per litre, with daily harvests possible over 20 days. With the cost of culture medium at around £0.50 per litre, large-scale production becomes more feasible. A 50,000-litre facility, for instance, could produce cultivated chicken at approximately £5.00 per pound - comparable to the price of organic chicken [17].

"Our findings show that continuous manufacturing enables cultivated meat production at a fraction of current costs, without resorting to genetic modification or mega-factories. This technology brings us closer to making cultivated meat a viable and sustainable alternative to traditional animal farming." - Yaakov Nahmias, Believer Meats founder [18]

Consumer Education Through Cultivated Meat Shop

CultivatedMeat.co.uk

For consumers, understanding how cultivated meat is made can be just as important as the product itself. Clear, accessible information is essential to build trust and confidence in this emerging technology.

Cultivated Meat Shop is designed to bridge the gap between complex science and everyday understanding. As the first consumer-facing platform dedicated to explaining cell harvesting methods, it simplifies biotechnology concepts and highlights how these processes result in meat that’s safe, sustainable, and delicious.

Education is key to gaining consumer acceptance. Platforms like Cultivated Meat Shop not only explain the science but also prepare consumers for the arrival of cultivated meat in the UK. Features like waitlist sign-ups and product previews ensure the public stays informed and engaged.

As the industry continues to refine harvesting techniques for better cell yields and efficiency [7], keeping consumers in the loop is vital. By fostering transparency and understanding, platforms like this help cultivated meat move from a lab innovation to a mainstream food choice, aligning with the industry’s broader goals of reliability and sustainability.

Choosing the Right Cell Harvesting Method

Selecting the most suitable cell harvesting method goes beyond technical considerations - it's a decision that significantly impacts production costs, regulatory compliance, and consumer acceptance. With UK and EU regulations becoming stricter and consumer awareness on the rise, producers must carefully evaluate their options to align with both market demands and legal requirements.

Regulatory compliance is a critical factor. Under the EU Novel Foods Regulation [3], producers must provide comprehensive documentation and conduct rigorous risk assessments. This "precautionary approach" ensures that all new food products meet the highest standards for consumer health. Every step of the harvesting process, from the choice of enzymes to contamination control measures, must be meticulously documented and justified.

Cost considerations also play a major role. Current projections show that media costs could drop to below £0.20 per litre - significantly lower than the current average of £0.50 per litre for serum-free media [2]. These reductions could make certain methods more attractive from a financial perspective, especially for large-scale production.

Ethical concerns are increasingly shaping industry practices. Avoiding animal-derived components, like foetal bovine serum, is becoming a priority. Singapore's approval of serum-free cultivated chicken in early 2023 reflects this global shift [2]. For UK and EU producers, adopting serum-free and animal-free harvesting methods not only addresses ethical issues but also aligns with consumer preferences and reduces costs.

The impact on product quality is another key consideration. The chosen method influences factors such as cell integrity, differentiation, and the final texture of the product [3][19]. While enzyme-based methods may yield higher cell counts, they can raise concerns about enzyme residues. On the other hand, enzyme-free methods might be seen as more "natural", though they often require more complex processing.

Consumer perception cannot be ignored. In the UK, 78% of consumers are aware of cultivated meat, but only 30% currently consider it safe to eat, compared to 77% for plant-based proteins [20]. Transparency about production methods is crucial, as one-third of UK consumers are open to trying cultivated meat, and over a quarter would be more inclined to do so if assured of its safety and proper regulation [20]. Platforms like CultivatedMeat.co.uk help bridge the gap by explaining how different harvesting methods affect safety, sustainability, and taste, fostering the trust needed for broader acceptance.

Ultimately, the decision hinges on balancing regulatory requirements, production costs, quality standards, and consumer expectations. With production costs for cultivated chicken potentially dropping to around £5.00 per pound ($6.20) [18][14], the methods that successfully combine efficiency, safety, and consumer trust will shape the future of cultivated meat in the UK and EU markets.

FAQs

Why do enzyme-free methods better preserve cell integrity compared to enzyme-based methods in cultivated meat production?

Enzyme-free methods offer a gentler way to harvest cells, keeping them closer to their natural state. By skipping enzymes, these methods protect cell-cell and cell-matrix interactions, lowering the chances of structural damage.

This technique is especially useful in cultivated meat production, where maintaining cell integrity is key to producing consistent, high-quality results. It helps ensure cells stay viable and functional, promoting effective growth and proper tissue formation.

What regulatory challenges do enzyme-free cell harvesting methods face compared to enzyme-based ones?

Enzyme-free cell harvesting methods tend to encounter fewer regulatory challenges. By avoiding the use of enzymes, these techniques reduce worries about leftover enzymes, chemical residues, or contamination risks that are often linked to enzyme-based approaches. This can make safety evaluations and approval processes more straightforward.

On the other hand, enzyme-based methods are usually subject to more rigorous oversight. The potential presence of enzyme residues and contamination adds complexity to meeting regulatory requirements. Regardless of the chosen method, both must adhere to strict UK and international standards to ensure cultivated meat products meet the necessary safety, purity, and quality benchmarks for commercial production.

How do enzyme-free cell harvesting techniques improve the cost and scalability of cultivated meat production?

Enzyme-free cell harvesting methods are transforming the way cultivated meat is produced, offering a more cost-efficient and scalable approach. By removing the reliance on pricey enzymes and simplifying the steps involved, these techniques significantly cut production expenses. Take explant cell isolation, for example - it streamlines harvesting, making the process faster and less demanding in terms of resources.

On top of that, innovations like serum-free media and continuous manufacturing are driving costs down even further. Serum-free media, now available for under £1 per litre, has made large-scale production much more affordable. These advancements are crucial for meeting growing consumer demand across the UK, paving the way for cultivated meat to become a more accessible and ethical protein option.

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Author David Bell

About the Author

David Bell is the founder of Cultigen Group (parent of Cultivated Meat Shop) and contributing author on all the latest news. With over 25 years in business, founding & exiting several technology startups, he started Cultigen Group in anticipation of the coming regulatory approvals needed for this industry to blossom.

David has been a vegan since 2012 and so finds the space fascinating and fitting to be involved in... "It's exciting to envisage a future in which anyone can eat meat, whilst maintaining the morals around animal cruelty which first shifted my focus all those years ago"